PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG024862t1
Common NameTCM_024862
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bZIP
Protein Properties Length: 483aa    MW: 54343.2 Da    PI: 7.5688
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG024862t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.68.5e-11191226540
                       CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLea 40 
                       k  rr+++NReAAr+sR+RKka++++Le     L++
  Thecc1EG024862t1 191 KTLRRLAQNREAARKSRLRKKAYVQQLESSRIRLTQ 226
                       7789***********************985555444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.8E-8184233No hitNo description
SMARTSM003386.4E-9187259IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.266189233IPR004827Basic-leucine zipper domain
CDDcd147082.76E-21191240No hitNo description
PfamPF001705.3E-8191228IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.5E-7191233No hitNo description
PROSITE patternPS000360194209IPR004827Basic-leucine zipper domain
PfamPF141444.6E-32281355IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MATSRGNMNN SIQLDHHQHN QHHHHQNQQQ QQQQQHQHQI QEHHQNQIPY AMMQSSSSSS  60
IPGNFISKDT GAYDLGELDQ ALFLYLDGQD PSTIQEQRHN SGMRPPTLNI FPSQPMHVEP  120
PLSTKTSRGL VSPATSGSKR PSEPSMELAN ARNDASGSAP DQPAKAVKRE GNRKGPTSSS  180
EQEGPKTPDP KTLRRLAQNR EAARKSRLRK KAYVQQLESS RIRLTQLEQE LQRARAQGMF  240
FGGGVLGGEQ GLPVGINNIS SDAAVFDIEY ARWLEEHHRL MCELRAAVQE HLPENELRIF  300
VDNCLAHFDE LMNLKSMVAK TDVFHLVSGM WKTPAERCFT WMGGFRPSEL IKVILNQIEP  360
LTEQQIMGIC ALQQSTQEAE EALSQGLEAL NQSLSDIITS DSLSCPPNMT NYMGQMAIAM  420
NKLATLEGFV RQADNLRHQT IHRLHQILTT RQAARCFLAI AEYFHRLRAL SSLWLARPRQ  480
EQ*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00491DAPTransfer from AT5G06839Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007028940.10.0BZIP transcription factor family protein
SwissprotO241601e-128TGA21_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-2.1
TrEMBLA0A061EYD60.0A0A061EYD6_THECC; BZIP transcription factor family protein
STRINGVIT_08s0007g06160.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72072843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.31e-176bZIP family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]